{"id":18,"date":"2019-12-11T13:42:33","date_gmt":"2019-12-11T13:42:33","guid":{"rendered":"http:\/\/blogs.kent.ac.uk\/edna\/?page_id=18"},"modified":"2023-06-28T06:56:15","modified_gmt":"2023-06-28T05:56:15","slug":"examples","status":"publish","type":"page","link":"https:\/\/blogs.kent.ac.uk\/edna\/qpcr-data\/examples\/","title":{"rendered":"Examples"},"content":{"rendered":"<p>A step-by-step analysis of a <a href=\"https:\/\/www.dropbox.com\/scl\/fi\/q353ohybwq8d18li8ugxx\/test_data3.csv?dl=0&amp;rlkey=gr78dn6i0skmfbwhe6pofu6zm\" target=\"_blank\" rel=\"noopener noreferrer\">simulated data set<\/a> with S=100 sites, M=3 water samples from each site and K=12 qPCRs for each samples and associated covariates can be found <a href=\"https:\/\/www.dropbox.com\/scl\/fi\/ttg38py99pr86rsrhfoua\/eDNA_Rshiny_practical_3.pdf?dl=0&amp;rlkey=1lbfi6zzhrncsjnk747nsm5ad\" target=\"_blank\" rel=\"noopener noreferrer\">here<\/a>. Recently, when you download a spreadsheet, the associated file tends to be saved as a .xlsx file; please make sure before you use the data set that it is a .csv file.<\/p>\n<p>A recording of a step-by-step analysis of a <a href=\"https:\/\/www.dropbox.com\/scl\/fi\/eexma15835i3hq19zk8qj\/test_data4.csv?dl=0&amp;rlkey=tswxu0sfu2xguf66b7lwdo4fl\" target=\"_blank\" rel=\"noopener\">simulated data set<\/a> with S=200, sites, M=2 water samples from each site, K=10 qPCRs for each sample,\u00a0 with some occupied sites having an associated confirmed species presence record and two covariates for the probability of site occupancy can be found <a href=\"https:\/\/kent.cloud.panopto.eu\/Panopto\/Pages\/Viewer.aspx?id=364ee0fc-d886-4b09-9ab3-ad1e00ec3b12\" target=\"_blank\" rel=\"noopener\">here<\/a>.<\/p>\n<p>There is also an online version of the app, <a href=\"https:\/\/seak.shinyapps.io\/eDNA\/\">RShiny App<\/a><\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>A step-by-step analysis of a simulated data set with S=100 sites, M=3 water samples from each site and K=12 qPCRs for each samples and associated covariates can be found here. Recently, when you download a spreadsheet, the associated file tends to be saved as a .xlsx file; please make sure before you use the data [&hellip;]<\/p>\n","protected":false},"author":40694,"featured_media":0,"parent":142,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/pages\/18"}],"collection":[{"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/users\/40694"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/comments?post=18"}],"version-history":[{"count":29,"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/pages\/18\/revisions"}],"predecessor-version":[{"id":376,"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/pages\/18\/revisions\/376"}],"up":[{"embeddable":true,"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/pages\/142"}],"wp:attachment":[{"href":"https:\/\/blogs.kent.ac.uk\/edna\/wp-json\/wp\/v2\/media?parent=18"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}